Led by Gregor Gorjanc Summary AlphaMate is a program for optimising selection, maintenance of diversity, and mate allocation in breeding programmes. A range of breeding programmes can be optimised with AlphaMate (animal, crop, tree, fish, ...). A short description is given in Gorjanc and Hickey (2018), while a detailed description is given in the manual. https://github.com/AlphaGenes/AlphaMate Manual Gorjanc and Hickey (2018) AlphaMate: a program for optimizing selection, maintenance of diversity and mate allocation in breeding programs, Bioinformatics, 34(19), 3408–3411 https://doi.org/10.1093/bioinformatics/bty375 This article was published on 2024-09-02