Thiago P. Oliveira

TRAIN@Ed Fellow

Moved to a research scientist position at AbacusBio (UK)

 

 

Research at the Highlander Lab

Image
Highlander Thiago

We have recently initiated research to extend the partitioning method of Garcia-Cortes et al. (2008) to plant breeding programmes and expand its versatility based on the Alphapart implementation. Specifically, we are aiming to:

  • Analyse changes in genetic variance in addition to the genetic mean,
  • Account for uncertainty in genetic trends and their partitions,
  • Utilise genomic information to identify which genome regions drive genetic change and which sources contributed favourable alleles in these genome regions, and
  • Expand the AlphaPart R package.

Garcia-Cortes et al. (2008) Partition of the genetic trend to validate multiple selection decisions, Animal.

AlphaPart

Background

I hold a PhD in Statistics from the University of São Paulo, Brazil, and have at least nine years of experience in experimental and applied statistics. I developed statistical methods in longitudinal concordance correlation, multilevel model (hierarchical model), generalized linear mixed-effects model, state-space models, experimental design, longitudinal data, and R packages development.

I am specifically interested in:

  • Statistical modelling
  • Web applications (Dashboards)
  • R package development
  • Quantitative Genetics, Agriculture, and Sports

Programming language and software:

Statistical Computing:
  • R and Shiny
  • SAS
  • Maple and SageMath
  • C++
Computational programs:
  • LaTex
  • Markdown
  • Office
  • Gimp and Inkscape
  • GNU Emacs, RStudio, VS Code
  • Linux distributions, macOS, and Windows
Code hosting platform:
  • GitHub and GitLab
  • Overleaf

Hobbies and personal interests

Photography:
I love photography because it is much more than just taking pictures. Photography develops conceptual skills such as colour composition, biological concepts in wildlife photography, and digital image post-production.
 
Blogging:
I have been writing blog posts as an excellent way of sharing my knowledge and thinking with others.